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The New York state health department said fracking for natural gas can’t be done safely, dooming prospects that Gov.Andrew Cuomo will end a six-year moratorium.

Acting Health Commissioner Howard Zucker said at a Cabinet meeting in Albany on Wednesday that studies on the extraction technique’s effects on water, air and soil are inconsistent, incomplete and raise too many “red flags” to allow.

“I consider the people of the state of New York as my patients,” said Zucker, a medical doctor. “We cannot afford to make a mistake. The potential risks are too great. In fact, they are not fully known.”

Parts of New York sit atop the gas-rich Marcellus shale formation, and the governor has been trying to balance the prospects for the economic development seen in Ohio and Pennsylvania against environmentalists’ warnings that fracking may taint water and make farmland unusable.

The ban will harm the economy and deprive local governments and the state of revenue, according to the American Petroleum Institute’s New York State Petroleum Council.

“Today’s action by Gov. Cuomo shows that New York families, teachers, roads and good-paying jobs have lost out to political gamesmanship,” said Karen Moreau, executive director of the oil-and-gas trade group.

The state banned gas drilling by high-volume hydraulic fracturing in July 2008 so regulators could conduct an environmental review and develop rules. In September 2012, Cuomo said he wouldn’t decide the issue until after health officials studied it.

Cuomo, a 57-year-old Democrat about to begin his second term, said Wednesday he’ll let science, not politics, determine his final decision.

“I will be bound by what the experts say,” Cuomo said at the Cabinet meeting before Zucker spoke.

Fracking, in which water and chemicals are injected into shale to free oil and gas, is allowed in at least 32 states.

Since Gov. David Paterson issued the New York moratorium, the average natural-gas price on the New York Mercantile Exchange has fallen 62 percent, declining to $3.70 per million British thermal units on the New York Mercantile Exchange.

The potential for drilling in New York was already hobbled by restrictions the state is planning should it move forward, said Joe Martens, the commissioner of the Environmental Conservation Department. The regulations, along with bans imposed by towns and cities, cut out at least 63 percent of the 12 million acres where gas could be tapped by fracking, Martens said.

“The economic benefits are clearly far lower than originally forecast,” Martens said. “The low price of gas only exacerbates this.”

In Pennsylvania, where fracking is permitted, more than $630 million has been distributed to communities since 2012, according to the New York State Petroleum Council’s statement. The shale energy industry has generated $2.1 billion in state and local tax revenue for Pennsylvania, the group said.

Federal regulations and state laws provide adequate environmental protection, the group said.

In the six years since New York’s moratorium took effect, many leases expired and companies left New York to drill in Ohio and Pennsylvania, industry lawyers and lobbyists said.

“I don’t know of anybody who is shovel-ready waiting for an announcement,” Thomas S. West, an Albany lawyer who said he represents several companies with New York leases as clients, said in an interview before the announcement.

The health department spent more than 4,500 hours on its analysis, reviewing academic studies, consulting experts and meeting with health officials in other states, Zucker said. The studies and data showed many potential health risks, including groundwater contamination in Wyoming and increased traffic deaths in areas of Pennsylvania.

Environmental groups cheered the decision, saying Cuomo demonstrated “courage” and “national leadership.”

“Mounting scientific evidence points to serious health risks from fracking operations,” Kate Sinding of the Natural Resources Defense Council said in a statement. “New Yorkers have made it loud and clear that we want to keep this reckless industry at bay. With this announcement, the governor has listened.”

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