More than three weeks after the military coup that ousted Egypt’s first democratically elected — and Islamist — president from power, the roots of a violent insurgency are burrowing fast into the sands of the Sinai Peninsula.

The rapid thud of machine-gun fire and the explosions of rocket-propelled grenades have begun to shatter the silence of the desert days and nights there with startling regularity, as militants assault the military and police forces stationed across this volatile territory that borders Israel and the Gaza Strip.

The emerging Sinai crisis gives Egypt’s military a pretext to crack down on Islamist opponents across the country, including in Cairo, where dozens were killed over the weekend when security forces opened fire on demonstrators rallying in support of ousted President Mohammed Morsi.

Egypt’s interim government issued a decree Sunday that granted the military the power to detain civilians, state media reported. Analysts and rights activists said the decree suggested that a state of emergency, a tool that the regime of now-deposed autocratic President Hosni Mubarak had used for decades to silence opponents, might soon follow.

But in the Sinai, where the reaction to Morsi’s ouster turned deadly within days of the coup, such state-sponsored violence and repression is likely to only feed the conviction of militants, who see themselves as waging a war against a despotic and irreligious military regime.

In the Sinai, which long has been Egypt’s most elusive and neglected region, a familiar cycle of repression has already taken hold. The military has clamped down hard on all routes in and out.

On Saturday, the armed forces launched Operation Desert Storm in the peninsula, according to the state-run Al-Ahram newspaper. The operation got under way after millions of Egyptians took to the streets Friday to heed the military’s call to give it a “mandate” to crack down on violence and “terrorism.”

Interior Minister Mohamed Ibrahim said Egypt’s security forces have been given permission to confront those who threaten the state’s “stability.”

“The people have given the army and the police a popular mandate to stand firmly against anyone who shakes the stability of the nation with terrorist or criminal acts,” Ibrahim said Sunday at a graduation ceremony for police recruits.

Bedouin leaders and Islamists in the Sinai say locals have been angered by the coup because it brought an end to Egypt’s nascent democracy — a concept that was slow to catch on in this deeply conservative territory that has long been suspicious of Cairo.

Many others, particularly Bedouin smugglers, in a population long accustomed to sweeping arrests, state-sanctioned discrimination and torture under Mubarak, say that they tasted freedom in the anarchy that prevailed under Morsi and that they are determined to avoid a return to the past even if it costs them their lives.

Sinai residents say “operations” under Morsi were more propaganda than action. But local leaders and rights groups fear that the military’s ongoing operation could target the Bedouin as a whole, rather than the 100 or so militants residing among them.

Since Egypt’s armed forces ousted Morsi on July 3, militants have launched dozens of attacks on military and police checkpoints and bases across the North Sinai governate, killing dozens, according to state health officials, and underscoring the potential for widening violence across the country as Islamist anger grows.

Lawlessness, smuggling and militancy have thrived on the peninsula since the 2011 fall of Mubarak’s regime.

Bedouin arms dealers who are sympathetic to the militants said in recent days that fighters have launched shoulder-fired antiaircraft Stinger missiles (known to the U.S. intelligence community as MANPADs) at military aircraft, laid improvised bombs along roads traversed heavily by troops, and fired barrages of bullets and rocket-propelled grenades (RPGs) at security personnel stationed there.

On Sunday, a police commander who spoke on condition of anonymity said police had located a fourth bomb outside the Sheik Zweid village police station within the space of less than 48 hours. The first three exploded, injuring several police officers, the official said.

Both police commanders and Bedouin leaders say the militants are a minority in the desert peninsula; the latter group says the militants consist mostly of locals who operate in small cells, with little to no command structure. But Bedouin leaders fear that the territory’s population may soon get swept up in the military’s crackdown, escalating the conflict into a wider war.

One night last week, militants struck the Hay al-Safa military base near Rafah with an RPG and then gunfire. Hours later, they struck again — with what local arms dealers said were armor-piercing bullets. Families living in the area said they have grown afraid to transit through security checkpoints at night, lest they get caught in the crossfire or get targeted by nervous troops. At least 10 civilians have died in the violence this month.

Unlike mainland Egypt, where Morsi supporters have staged thousands-strong protests that have shut down major roads and convulsed cities from Cairo to the Nile Delta, the Sinai has quickly taken its dissent to a more violent level.

Local Bedouins say it is the route borne of the territory’s cyclical history of state repression and a natural response from a local population flush with weapons and budding extremist groups.

“Protests aren’t really in our nature,” Abu Ashraf, a powerful tribal leader and smuggler in North Sinai, said last week using his nickname. “Our nature is . . . ” he said, then stopped, smiled and pantomimed firing a gun.

In the wake of the coup, Egyptian security forces locked down the single bridge that connects the peninsula to the mainland and set up a battery of checkpoints along the highways that link Cairo to the Suez Canal, and onward across North Sinai, where soldiers check IDs and sift through luggage in the trunks of cars. They shine strobe lights into vehicles at night. The Sinai Bedouin feel as if the state is targeting them — again.

Analysts and local political leaders in the northern Sinai interpreted the call by Gen. Abdel-Fattah el-Sissi, Egypt’s military commander, for a mandate to fight terrorism as a signal that a Mubarak-style crackdown was imminent. “I think el-Sissi wants public cover for his bloody work,” said Ahmed Salem, a spokesman for the Muslim Brotherhood in el-Arish, the regional capital of North Sinai.

As much as the Sinai insurgency derives from militant anger at Morsi’s ouster, it is also a pre-emptive backlash rooted in fear, say Bedouin leaders who sympathize with the militants.

“People here have gotten some freedoms, and they will not allow those to be taken away now,” said Mohamed, a fundamentalist sheik in North Sinai who requested that his last name not be used. “The coup took us back to square one,” he said, and the Sinai’s Islamists are expressing anger at the military “in any way they can.”

“If the state does not reverse el-Sissi’s mistake, there will be more for them to endure,” he said.

Morsi’s rule offered some respite from the repression — a new kind of freedom, some Bedouin leaders said. He didn’t deliver the roads, schools or hospitals that local leaders say would help break the territory’s cycle of violent resistance. But he left them alone.

“Nothing happened the year that Morsi was in power,” said one Bedouin smuggler who spent eight years in prison under Mubarak. “Morsi had no control here. But at least he didn’t insult or arrest anyone. When you would pass by the checkpoints, they would respect you. Now we’re back to the way it was before.”

The military says its crackdown is necessary to fight terrorism, but the Bedouin there say it only adds fuel to their rebellion, in a cycle that may soon spiral out of control.

Security officials say they have seized Syrian, Palestinian and even Russian fighters in the Sinai since Morsi’s ouster. They have accused the Muslim Brotherhood, which backs Morsi, and the Islamist militant group Hamas, which controls the Gaza Strip, of orchestrating the violence, and say that many of the Sinai’s fighters are well-trained jihadists.

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